STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF1AKMT3EEF1A lysine methyltransferase 3. (221 aa)    
Predicted Functional Partners:
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
   
 0.747
SPATA5
Spermatogenesis associated 5.
   
 0.747
LOC105901173
Transitional endoplasmic reticulum ATPase.
   
 0.747
etfb
Electron transfer flavoprotein subunit beta.
     
 0.692
gnpnat1
Glucosamine-phosphate N-acetyltransferase 1.
     
 0.627
ENSCHAP00000024838
annotation not available
   
  
 0.568
ENSCHAP00000011314
Katanin p60 subunit A-like 2.
    
  0.567
mettl18
Methyltransferase like 18.
   
  
 0.558
pfkfb2
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2.
    
 0.549
LOC105906846
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-like.
    
 0.549
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.