STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000040285BTB (POZ) domain containing 11a. (1052 aa)    
Predicted Functional Partners:
bbs9
Bardet-Biedl syndrome 9.
    
 0.686
ENSCHAP00000022879
UBX domain protein 7.
    
  0.663
ENSCHAP00000033421
Tetratricopeptide repeat domain 8.
    
 0.658
bbs7
Bardet-Biedl syndrome 7.
    
 0.623
ENSCHAP00000027667
Cullin 3a.
    
 0.614
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.609
LOC105899975
Next to BRCA1 gene 1 protein-like.
    
 0.589
ENSCHAP00000031450
NBR1 autophagy cargo receptor a.
    
 0.589
CUL1
Cullin 1.
    
 0.581
LOC105907046
Cullin-1.
    
 0.581
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.