STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000040418Leiomodin 1b (smooth muscle). (674 aa)    
Predicted Functional Partners:
cops3
COP9 signalosome subunit 3.
    
  0.772
myl1
Myosin light chain 1.
   
 
 0.762
atp5f1a
methyl-CpG-binding domain protein 2-like.
    
  0.729
cops5
COP9 signalosome subunit 5.
    
 0.728
DCAF1
DDB1 and CUL4 associated factor 1.
    
  0.723
COPS7B
COP9 signalosome subunit 7A.
    
  0.721
ENSCHAP00000008881
Angiomotin.
    
  0.720
COPS6
COP9 signalosome subunit 6.
    
  0.700
LOC105899958
COP9 signalosome complex subunit 1.
    
  0.700
GPS1
G protein pathway suppressor 1.
    
  0.700
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.