STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab5bRAB5B, member RAS oncogene family. (218 aa)    
Predicted Functional Partners:
ENSCHAP00000001768
annotation not available
   
 0.974
ENSCHAP00000002222
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.974
ENSCHAP00000036095
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.974
ENSCHAP00000006066
Phosphatidylinositol 3-kinase, catalytic subunit type 3.
    
 0.969
ENSCHAP00000046232
Early endosome antigen 1.
    
 0.967
ENSCHAP00000033892
Rabenosyn, RAB effector.
   
 0.948
ENSCHAP00000002698
HESX homeobox 1.
    
 
 0.929
ENSCHAP00000044126
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 
 0.929
ENSCHAP00000011054
GTPase activating protein and VPS9 domains 1.
    
 0.894
ENSCHAP00000014646
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.873
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.