STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000040840PDZ and LIM domain 3a. (317 aa)    
Predicted Functional Partners:
pdlim4
PDZ and LIM domain 4.
  
  
0.768
ENSCHAP00000004451
G protein-coupled receptor kinase interacting ArfGAP 2b.
    
 0.757
ENSCHAP00000022124
G protein-coupled receptor kinase interacting ArfGAP 1.
    
 0.757
ENSCHAP00000059562
G protein-coupled receptor kinase interacting ArfGAP 2a.
    
 0.757
ENSCHAP00000003208
EH domain binding protein 1.
   
 0.750
ENSCHAP00000026304
EH domain binding protein 1-like 1a.
   
 0.750
ehbp1l1
EH domain binding protein 1 like 1.
   
 0.750
ENSCHAP00000023085
Protein tyrosine kinase 2 beta, b.
    
 0.712
ENSCHAP00000028996
Protein tyrosine kinase 2 beta, a.
    
 0.712
ENSCHAP00000031111
Protein tyrosine kinase 2ab.
    
 0.712
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.