STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a43Solute carrier family 25 member 43. (344 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
   0.939
rpl14
Ribosomal protein L14.
   
 
 0.775
mrps10
Mitochondrial ribosomal protein S10.
   
  0.766
rps18
Ribosomal protein S18.
   
 
 0.737
ENSCHAP00000016319
succinate-CoA ligase, ADP-forming, beta subunit.
     
 0.730
rpl8
Ribosomal protein L8.
   
 
 0.727
LOC105909048
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial.
     
 0.720
rpl28
Ribosomal protein L28.
   
   0.713
LOC105891117
60S ribosomal protein L13.
   
   0.708
ENSCHAP00000059020
Ribosomal protein S4 X-linked.
   
   0.707
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.