STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000040992annotation not available (144 aa)    
Predicted Functional Partners:
ENSCHAP00000018545
annotation not available
    
  0.770
ENSCHAP00000000638
annotation not available
    
  0.564
LOC105907095
Chemokine XC receptor 1-like.
    
  0.564
ENSCHAP00000041033
annotation not available
    
  0.564
ENSCHAP00000018383
Chemokine (C motif) receptor 1b, duplicate 1.
    
  0.499
ENSCHAP00000018495
Chemokine (C motif) receptor 1b, duplicate 1.
    
  0.499
rps27a
Ribosomal protein S27a.
    
  0.477
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.476
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.461
ENSCHAP00000030857
annotation not available
    
  0.461
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.