STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041014Mitochondrial ribosomal protein L48. (206 aa)    
Predicted Functional Partners:
mrpl13
Mitochondrial ribosomal protein L13.
   
 
 0.981
mrps33
Mitochondrial ribosomal protein S33.
   
 
 0.976
ENSCHAP00000002735
Mitochondrial ribosomal protein L30.
   
 
 0.974
ENSCHAP00000019274
Mitochondrial ribosomal protein L40.
   
 
 0.974
ENSCHAP00000023178
Mitochondrial ribosomal protein L51.
   
 
 0.973
ENSCHAP00000010615
Mitochondrial ribosomal protein L4.
   
 
 0.969
mrpl20
Mitochondrial ribosomal protein L20.
   
 
 0.968
ENSCHAP00000011459
Mitochondrial ribosomal protein L35.
   
   0.967
mrpl58
Mitochondrial ribosomal protein L58.
   
 
 0.966
ENSCHAP00000026704
Mitochondrial ribosomal protein S22.
   
 
 0.965
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.