STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041145Synapsin IIa. (490 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
     
 0.841
RIMS2-2
Regulating synaptic membrane exocytosis 2.
     
 0.841
snap23
Synaptosome associated protein 23.
   
 0.801
ENSCHAP00000011416
Synaptosome associated protein 29.
   
 0.796
vamp3
Vesicle associated membrane protein 3.
    
 0.771
ENSCHAP00000008243
annotation not available
   
 0.767
snap25
Synaptosome associated protein 25.
   
 0.767
syt1
Synaptotagmin 1.
   
 0.761
ENSCHAP00000019279
Syntaxin 16.
     
 0.756
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
   
 0.756
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.