STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041182alkB homolog 8, tRNA methyltransferase. (659 aa)    
Predicted Functional Partners:
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.798
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.788
med6
Mediator complex subunit 6.
   
 
  0.771
ENSCHAP00000051830
annotation not available
   
 
  0.765
ENSCHAP00000011007
Afadin, adherens junction formation factor a.
    
  0.577
ENSCHAP00000026154
annotation not available
    
  0.577
alkbh7
alkB homolog 7.
      
 0.539
alkbh1
alkB homolog 1, histone H2A dioxygenase.
      
 0.539
jmjd4
Jumonji domain containing 4.
   
  
 0.534
ENSCHAP00000001297
alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.533
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.