STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041366annotation not available (387 aa)    
Predicted Functional Partners:
rpl23a
Ribosomal protein L23a.
    
   0.737
gosr1
Golgi SNAP receptor complex member 1.
     
 0.698
nfyb
Nuclear transcription factor Y subunit beta.
   
    0.677
ENSCHAP00000048732
Mitochondrial ribosomal protein L36.
    
 
 0.677
mrpl20
Mitochondrial ribosomal protein L20.
    
 
 0.637
mrrf
Mitochondrial ribosome recycling factor.
    
 
 0.625
ENSCHAP00000010615
Mitochondrial ribosomal protein L4.
    
   0.619
rpl4
Ribosomal protein L4.
    
   0.619
rps16
Ribosomal protein S16.
    
   0.619
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.610
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.