STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041368RNA binding motif protein 6. (847 aa)    
Predicted Functional Partners:
ENSCHAP00000044342
Nucleolar protein 6 (RNA-associated).
   
 0.922
ENSCHAP00000028233
UTP6 small subunit processome component.
    
 0.921
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
  0.917
bysl
Bystin like.
    
 0.917
ENSCHAP00000011325
Ribosomal RNA processing 36.
   
  0.914
SUGP1
SURP and G-patch domain containing 1.
   
 0.887
ENSCHAP00000018854
NOP14 nucleolar protein homolog (yeast).
    
  0.872
ENSCHAP00000025613
annotation not available
    
 0.870
ddx10
DEAD-box helicase 10.
    
 0.853
dhx15
DEAH-box helicase 15.
   
 0.847
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.