lhx1 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lhx1

LIM homeobox 1. (403 aa)

Predicted Functional Partners:

ENSCHAP00000025455

0.935

ldb1

0.635

ENSCHAP00000039961

0.635

ENSCHAP00000056531

0.635

ENSCHAP00000011636

0.519

SRF

0.519

ENSCHAP00000003853

0.512

gata6

0.512

gata5

0.512

ptf1a

0.512

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000003853	ENSCHAP00000011636	ENSCHAP00000003853	ENSCHAP00000011636	GATA binding protein 4.	annotation not available	0.776
ENSCHAP00000003853	ENSCHAP00000039961	ENSCHAP00000003853	ENSCHAP00000039961	GATA binding protein 4.	annotation not available	0.585
ENSCHAP00000003853	ENSCHAP00000056531	ENSCHAP00000003853	ENSCHAP00000056531	GATA binding protein 4.	LIM domain binding 2b.	0.585
ENSCHAP00000003853	SRF	ENSCHAP00000003853	ENSCHAP00000049890	GATA binding protein 4.	Serum response factor.	0.777
ENSCHAP00000003853	ldb1	ENSCHAP00000003853	ENSCHAP00000025561	GATA binding protein 4.	LIM domain binding 1.	0.585
ENSCHAP00000003853	lhx1	ENSCHAP00000003853	ENSCHAP00000041402	GATA binding protein 4.	LIM homeobox 1.	0.512
ENSCHAP00000003853	ptf1a	ENSCHAP00000003853	ENSCHAP00000061186	GATA binding protein 4.	Pancreas associated transcription factor 1a.	0.470
ENSCHAP00000011636	ENSCHAP00000003853	ENSCHAP00000011636	ENSCHAP00000003853	annotation not available	GATA binding protein 4.	0.776
ENSCHAP00000011636	SRF	ENSCHAP00000011636	ENSCHAP00000049890	annotation not available	Serum response factor.	0.852
ENSCHAP00000011636	gata5	ENSCHAP00000011636	ENSCHAP00000060141	annotation not available	GATA binding protein 5.	0.776
ENSCHAP00000011636	gata6	ENSCHAP00000011636	ENSCHAP00000044160	annotation not available	GATA binding protein 6.	0.776
ENSCHAP00000011636	lhx1	ENSCHAP00000011636	ENSCHAP00000041402	annotation not available	LIM homeobox 1.	0.519
ENSCHAP00000025455	lhx1	ENSCHAP00000025455	ENSCHAP00000041402	Cyclin K.	LIM homeobox 1.	0.935
ENSCHAP00000039961	ENSCHAP00000003853	ENSCHAP00000039961	ENSCHAP00000003853	annotation not available	GATA binding protein 4.	0.585
ENSCHAP00000039961	gata5	ENSCHAP00000039961	ENSCHAP00000060141	annotation not available	GATA binding protein 5.	0.585
ENSCHAP00000039961	gata6	ENSCHAP00000039961	ENSCHAP00000044160	annotation not available	GATA binding protein 6.	0.585
ENSCHAP00000039961	lhx1	ENSCHAP00000039961	ENSCHAP00000041402	annotation not available	LIM homeobox 1.	0.635
ENSCHAP00000039961	ptf1a	ENSCHAP00000039961	ENSCHAP00000061186	annotation not available	Pancreas associated transcription factor 1a.	0.589
ENSCHAP00000056531	ENSCHAP00000003853	ENSCHAP00000056531	ENSCHAP00000003853	LIM domain binding 2b.	GATA binding protein 4.	0.585
ENSCHAP00000056531	gata5	ENSCHAP00000056531	ENSCHAP00000060141	LIM domain binding 2b.	GATA binding protein 5.	0.585