STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041464Spectrin repeat containing, nuclear envelope 1b. (8659 aa)    
Predicted Functional Partners:
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.904
ENSCHAP00000001294
annotation not available
    
 0.828
ENSCHAP00000012992
Si:dkey-92f12.2.
    
 0.828
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
    
 0.737
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.719
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.716
taf10
TATA-box binding protein associated factor 10.
    
  0.704
ENSCHAP00000025898
annotation not available
    
 0.698
syne3
Spectrin repeat containing nuclear envelope family member 3.
    
0.686
ENSCHAP00000016490
Intersectin 2b.
    
 0.677
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.