STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041632Mitochondrial genome maintenance exonuclease 1. (341 aa)    
Predicted Functional Partners:
ENSCHAP00000017826
ECSIT signaling integrator.
    
   0.658
GRSF1
G-rich RNA sequence binding factor 1.
    
 
 0.579
DNA2
DNA replication helicase/nuclease 2.
   
  
 0.538
ENSCHAP00000035759
Polymerase (DNA directed), gamma 2, accessory subunit.
      
 0.535
LOC105910803
Cytochrome c oxidase assembly factor 7.
      
 0.532
LOC105911499
Chromosome unknown open reading frame, human C18orf54.
      
 0.529
ENSCHAP00000053945
annotation not available
      
 0.528
ENSCHAP00000000928
Si:dkey-274m17.3.
      
 0.525
ENSCHAP00000048884
PYM homolog 1, exon junction complex associated factor.
      
 0.514
ENSCHAP00000045505
Polymerase (DNA directed), gamma.
    
 
 0.492
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.