STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scn1bSodium voltage-gated channel beta subunit 1. (231 aa)    
Predicted Functional Partners:
ENSCHAP00000047252
Sodium channel, voltage-gated, type II, beta.
    
 0.983
ENSCHAP00000014161
Sodium channel, voltage-gated, type IV, alpha, a.
    
 0.980
SCN4A
Sodium voltage-gated channel alpha subunit 4.
    
 0.980
ENSCHAP00000023809
Sodium channel, voltage gated, type V-like, alpha b.
   
 0.960
ENSCHAP00000052136
Sodium channel, voltage gated, type VIII, alpha subunit a.
   
 0.946
ENSCHAP00000013775
Sodium channel, voltage gated, type XII, alpha a.
   
 0.940
SCN4B
Sodium voltage-gated channel beta subunit 4.
   
 0.937
ENSCHAP00000018571
Sodium channel, voltage gated, type VIII, alpha subunit b.
   
 0.935
ENSCHAP00000009365
Sodium channel, voltage-gated, type I like, alpha b.
   
 0.934
ENSCHAP00000062721
annotation not available
   
 0.934
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.