STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srmSpermidine synthase. (289 aa)    
Predicted Functional Partners:
ENSCHAP00000050736
Aminoadipate-semialdehyde synthase.
   
 0.987
odc1
Ornithine decarboxylase 1.
  
 0.948
mtap
Methylthioadenosine phosphorylase.
  
 
 0.941
ENSCHAP00000004510
Spermine synthase.
  
  
0.940
nit2
Nitrilase family member 2.
 
 
 0.930
ENSCHAP00000000433
Agmatine ureohydrolase (agmatinase).
  
 
 0.929
ENSCHAP00000000460
Agmatine ureohydrolase (agmatinase).
  
 
 0.929
smox
Spermine oxidase.
     
 0.925
oat
Ornithine aminotransferase.
    
 0.914
LOC105904612
Diamine acetyltransferase 1-like.
    
 0.906
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.