STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041767Actin-like 6B. (429 aa)    
Predicted Functional Partners:
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
   
 0.998
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
   
 0.998
smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
   
 0.995
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.994
ruvbl1
RuvB like AAA ATPase 1.
   
 0.994
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
    
 0.994
ENSCHAP00000054960
Actin related protein 8.
    
0.993
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.989
phf10
PHD finger protein 10.
    
 0.987
ENSCHAP00000051493
Mortality factor 4 like 1.
   
 0.987
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.