STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000041987DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (897 aa)    
Predicted Functional Partners:
ENSCHAP00000011924
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
   
 0.995
ENSCHAP00000024514
WRN RecQ like helicase.
  
 0.993
dscc1
DNA replication and sister chromatid cohesion 1.
   
 0.992
ENSCHAP00000017918
CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae).
   
 0.991
ENSCHAP00000046663
SMC5-SMC6 complex localization factor 1.
  
 0.979
ENSCHAP00000002381
Excision repair cross-complementation group 3.
   
 0.978
LOC105889985
General transcription factor IIH subunit 2-like.
    
 0.976
ENSCHAP00000026594
General transcription factor IIH, polypeptide 3.
    
 0.975
gtf2h1
General transcription factor IIH subunit 1.
    
 0.975
mnat1
MNAT1 component of CDK activating kinase.
    
 0.974
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.