STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000042070Anterior gradient 2. (170 aa)    
Predicted Functional Partners:
SPDEF
SAM pointed domain containing ETS transcription factor.
   
  
 0.659
ENSCHAP00000018538
Dystroglycan 1.
    
 
 0.591
ENSCHAP00000007951
Prolyl 4-hydroxylase, beta polypeptide.
    
 
 0.506
LOC105897827
SAM pointed domain-containing Ets transcription factor-like.
   
  
 0.484
ENSCHAP00000009871
Thioredoxin-related transmembrane protein 1.
    
 
 0.472
tmx4
Thioredoxin related transmembrane protein 4.
    
 
 0.455
TMX3
Thioredoxin related transmembrane protein 3.
    
 
 0.455
PDIA6
Protein disulfide isomerase family A member 6.
    
 
 0.446
ENSCHAP00000051131
Protein disulfide isomerase family A, member 6.
    
 
 0.446
erp27
Endoplasmic reticulum protein 27.
    
 
 0.436
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.