STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jade3Jade family PHD finger 3. (815 aa)    
Predicted Functional Partners:
LOC105890396
Chromatin modification-related protein MEAF6.
    
 0.909
MEAF6
MYST/Esa1 associated factor 6.
    
 0.909
LOC105898337
Inhibitor of growth protein 5-like.
    
 0.862
ing4
Inhibitor of growth family member 4.
    
 0.862
ENSCHAP00000029449
Inhibitor of growth family, member 5b.
    
 0.705
ENSCHAP00000029957
annotation not available
    
 0.705
KAT7
Lysine acetyltransferase 7.
    
 0.632
ENSCHAP00000023835
annotation not available
    
 0.632
ENSCHAP00000024248
annotation not available
    
 0.632
ENSCHAP00000029304
annotation not available
    
 0.632
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.