STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cebpaCCAAT enhancer binding protein alpha. (295 aa)    
Predicted Functional Partners:
cebpb
CCAAT enhancer binding protein beta.
   
0.974
ENSCHAP00000037085
DNA-damage-inducible transcript 3.
    
 0.956
ENSCHAP00000010756
Platelet-derived growth factor receptor, alpha polypeptide.
     
 0.887
runx2
RUNX family transcription factor 2.
    
 0.866
ENSCHAP00000021090
RUNX family transcription factor 2b.
    
 0.866
LOC105896069
Runt-related transcription factor 3-like.
    
 0.866
runx1t1
RUNX1 partner transcriptional co-repressor 1.
   
 0.857
ENSCHAP00000048413
CBFA2/RUNX1 partner transcriptional co-repressor 3.
   
 0.857
LOC105912624
Cytochrome c oxidase subunit 5A, mitochondrial-like.
   
 0.824
COX5A
Cytochrome c oxidase subunit 5A, mitochondrial-like.
   
 0.824
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.