STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtres1Mitochondrial transcription rescue factor 1. (255 aa)    
Predicted Functional Partners:
mrpl58
Mitochondrial ribosomal protein L58.
    
 
 0.869
ENSCHAP00000042150
Chromosome 12 open reading frame 65.
    
 
 0.863
mrpl16
Mitochondrial ribosomal protein L16.
   
   0.859
ENSCHAP00000019274
Mitochondrial ribosomal protein L40.
   
   0.857
mrpl13
Mitochondrial ribosomal protein L13.
   
   0.856
ENSCHAP00000047101
Mitochondrial ribosomal protein L33.
    
   0.855
ENSCHAP00000050120
Mitochondrial ribosomal protein L9.
   
   0.854
ENSCHAP00000001326
Mitochondrial ribosomal protein L22.
    
   0.851
mrpl54
Mitochondrial ribosomal protein L54.
    
   0.850
mrpl2
Mitochondrial ribosomal protein L2.
   
   0.828
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.