STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000042288ATPase phospholipid transporting 11B (putative). (1173 aa)    
Predicted Functional Partners:
ENSCHAP00000000336
Transmembrane protein 30C.
   
 0.913
ENSCHAP00000033694
Transmembrane protein 30Ab.
   
 0.913
tmem30a
Transmembrane protein 30A.
   
 0.913
tmem30b
Transmembrane protein 30B.
   
 0.883
ENSCHAP00000049610
annotation not available
   
 0.844
ENSCHAP00000058691
NME/NM23 family member 8.
   
 0.844
PLN
Phospholamban.
    
 0.772
ATP8A1
ATPase phospholipid transporting 8A1.
  
  
0.682
atp8a2
ATPase phospholipid transporting 8A2.
  
  
0.673
ENSCHAP00000031711
ATPase phospholipid transporting 10D.
  
  
0.643
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.