STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP000000425743-oxoacid CoA transferase 1b. (530 aa)    
Predicted Functional Partners:
cryl1
Crystallin lambda 1.
  
 
 0.933
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1.
  
 
 0.930
hmgcl
3-hydroxy-3-methylglutaryl-CoA lyase.
  
 
 0.930
ENSCHAP00000054064
annotation not available
  
 
 0.913
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
 0.910
ENSCHAP00000033699
3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble).
    
 0.905
hadhb
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta.
  
 
 0.904
acaa1
acetyl-CoA acyltransferase 1.
 
 
 0.898
acaa2
acetyl-CoA acyltransferase 2.
 
 
 0.896
LOC105897256
D-beta-hydroxybutyrate dehydrogenase, mitochondrial-like.
     
 0.891
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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