STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000042610Si:dkey-7f3.9. (724 aa)    
Predicted Functional Partners:
ENSCHAP00000037221
RAB3A interacting protein (rabin3)-like 1.
    
 0.748
ENSCHAP00000059265
RAB3A interacting protein (rabin3).
    
 0.748
CHML
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.730
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.716
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.704
exoc4
Exocyst complex component 4.
    
 0.702
ENSCHAP00000024034
Exocyst complex component 1.
    
 0.688
ENSCHAP00000053656
annotation not available
    
 0.685
ENSCHAP00000032485
Exocyst complex component 5.
    
 0.671
ENSCHAP00000023906
GDP dissociation inhibitor 1.
   
 0.662
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.