STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tomm34Translocase of outer mitochondrial membrane 34. (312 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.953
ENSCHAP00000024941
annotation not available
 
     
0.831
ppil6
Peptidylprolyl isomerase like 6.
   
 0.806
bbs9
Bardet-Biedl syndrome 9.
    
 0.795
ENSCHAP00000033421
Tetratricopeptide repeat domain 8.
    
 0.770
bbs7
Bardet-Biedl syndrome 7.
    
 0.756
cdc16
Cell division cycle 16.
    
 0.723
ENSCHAP00000050861
Anaphase promoting complex subunit 4.
    
 0.721
ENSCHAP00000034363
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.720
ENSCHAP00000042014
Anaphase promoting complex subunit 1.
    
 0.719
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.