STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105890774SUMO-conjugating enzyme UBC9-like. (158 aa)    
Predicted Functional Partners:
ENSCHAP00000009160
RAN binding protein 2.
   
 0.999
sumo1
Small ubiquitin like modifier 1.
   
 0.994
uba2
Ubiquitin like modifier activating enzyme 2.
   
 0.988
sae1
SUMO1 activating enzyme subunit 1.
  
 0.978
ENSCHAP00000000456
annotation not available
   
 0.976
ENSCHAP00000017737
Ran GTPase activating protein 1b.
   
 0.974
rangap1
Ran GTPase activating protein 1.
   
 0.974
ENSCHAP00000030492
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
   
 0.961
pcna
Proliferating cell nuclear antigen.
   
 0.958
LOC105901871
TAR DNA-binding protein 43-like.
   
  0.952
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.