STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105901173Transitional endoplasmic reticulum ATPase. (840 aa)    
Predicted Functional Partners:
ENSCHAP00000022879
UBX domain protein 7.
   
 0.999
ENSCHAP00000018088
UBX domain protein 6.
    
 0.994
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.994
faf2
Fas associated factor family member 2.
   
 0.994
UBXN4
UBX domain protein 4.
    
 0.994
faf1
Fas associated factor 1.
   
 0.993
ubxn2a
UBX domain protein 2A.
   
 0.993
ubxn1
UBX domain protein 1.
   
 0.992
nsfl1c
NSFL1 cofactor.
   
 0.992
ENSCHAP00000032928
NPL4 homolog, ubiquitin recognition factor.
   
 0.988
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.