STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrk1VRK serine/threonine kinase 1. (430 aa)    
Predicted Functional Partners:
ENSCHAP00000013289
LTV1 ribosome biogenesis factor.
    
 0.912
bysl
Bystin like.
    
 0.858
ENSCHAP00000045557
RIO kinase 2 (yeast).
    
 0.856
ENSCHAP00000003319
annotation not available
   
 0.829
ENSCHAP00000061076
Ankyrin repeat and LEM domain containing 2.
   
 0.829
tsr1
TSR1 ribosome maturation factor.
    
 0.823
nob1
NIN1 (RPN12) binding protein 1 homolog.
    
 0.791
rps3
Ribosomal protein S3.
    
 0.775
LOC105902405
Period circadian protein homolog 1-like.
    
 0.746
ENSCHAP00000019639
Period circadian clock 3.
    
 0.746
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.