STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AREL1Apoptosis resistant E3 ubiquitin protein ligase 1. (1019 aa)    
Predicted Functional Partners:
ENSCHAP00000030857
annotation not available
    
 0.835
trip12
Thyroid hormone receptor interactor 12.
   
 
0.826
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.825
rps27a
Ribosomal protein S27a.
   
 0.750
ENSCHAP00000025613
annotation not available
    
 0.740
ENSCHAP00000045730
Zinc finger, AN1-type domain 4.
   
 0.691
LOC105902762
Ubiquitin-like protein 4A.
   
 0.690
ENSCHAP00000017417
annotation not available
   
 0.690
ENSCHAP00000017620
annotation not available
   
 0.690
ENSCHAP00000030291
Ubiquitin B.
   
 0.690
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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