STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
primpolPrimase and DNA directed polymerase. (556 aa)    
Predicted Functional Partners:
ENSCHAP00000013547
Replication protein A1.
   
 
 0.990
ENSCHAP00000058585
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
    
 
 0.978
timeless
Timeless circadian regulator.
   
 
 0.964
ENSCHAP00000054016
Timeless interacting protein.
   
 
 0.964
CLSPN
Claspin.
   
 
 0.963
ENSCHAP00000005649
Replication protein A3.
   
 
 0.957
ENSCHAP00000056073
Ring finger and WD repeat domain 3.
    
 
 0.955
ENSCHAP00000006425
Zinc finger, RAN-binding domain containing 3.
    
 
 0.935
ska1
Spindle and kinetochore associated complex subunit 1.
   
 0.855
ENSCHAP00000005035
Replication protein A2.
   
 
 0.846
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.