STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000044070Transmembrane O-mannosyltransferase targeting cadherins 1. (949 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.953
ints1
Integrator complex subunit 1.
    
 0.951
ints13
Integrator complex subunit 13.
   
 0.939
ENSCHAP00000031142
Integrator complex subunit 5.
    
 0.930
ENSCHAP00000007330
Integrator complex subunit 3.
    
 0.929
ENSCHAP00000019273
Integrator complex subunit 10.
   
 0.917
ENSCHAP00000025474
Integrator complex subunit 6 like.
    
 0.892
ints9
Integrator complex subunit 9.
  
 0.881
ENSCHAP00000061749
Integrator complex subunit 11.
  
 0.876
ENSCHAP00000062673
Integrator complex subunit 12.
    
 0.854
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.