STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000044396Teashirt zinc finger homeobox 3b. (1149 aa)    
Predicted Functional Partners:
meis2
Meis homeobox 2.
   
 0.874
meis1
Meis homeobox 1.
   
 0.874
ENSCHAP00000055703
WW domain containing transcription regulator 1.
     
 0.863
ENSCHAP00000044241
Iroquois homeobox 3a.
    
 0.618
irx5
Iroquois homeobox 5.
    
 0.571
ENSCHAP00000021932
Iroquois homeobox 2a.
    
 0.571
ENSCHAP00000059821
Iroquois homeobox 5b.
    
 0.571
ENSCHAP00000000452
Iroquois homeobox 6a.
    
 0.532
LOC105905512
Iroquois-class homeodomain protein irx-4-B-like.
    
 0.532
LOC105905501
Iroquois-class homeodomain protein irx-1-like.
    
 0.532
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.