STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stoml2Stomatin like 2. (360 aa)    
Predicted Functional Partners:
cops5
COP9 signalosome subunit 5.
   
 0.972
COPS6
COP9 signalosome subunit 6.
   
  0.965
atp5f1a
methyl-CpG-binding domain protein 2-like.
  
 0.964
cops3
COP9 signalosome subunit 3.
   
  0.946
cops8
COP9 signalosome subunit 8.
   
 
  0.931
wdr6
WD repeat domain 6.
    
  0.928
ENSCHAP00000004681
annotation not available
     
 0.927
ENSCHAP00000008881
Angiomotin.
    
  0.925
ENSCHAP00000039121
Protein phosphatase 1, regulatory subunit 42.
   
 0.923
DCAF1
DDB1 and CUL4 associated factor 1.
     
 0.923
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.