STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105901658Extracellular matrix protein 1-like. (509 aa)    
Predicted Functional Partners:
ENSCHAP00000032523
Secreted phosphoprotein 2.
     
 0.600
zbtb44
Zinc finger and BTB domain containing 44.
    
 
 0.599
TIMP3
TIMP metallopeptidase inhibitor 3.
     
 0.591
ENSCHAP00000000395
annotation not available
      
 0.569
ENSCHAP00000026384
Solute carrier family 39 member 13.
      
 0.569
LOC105905527
Tetranectin-like.
     
 0.556
LOC105903635
Tetranectin-like.
     
 0.556
ENSCHAP00000021215
Zinc finger, SWIM-type containing 8.
      
 0.542
mrps14
Mitochondrial ribosomal protein S14.
      
 0.542
bms1
BMS1 ribosome biogenesis factor.
      
 0.541
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.