STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105890316Opsin-5-like. (430 aa)    
Predicted Functional Partners:
ENSCHAP00000055455
annotation not available
    
  0.485
ENSCHAP00000005677
Prepronociceptin a.
    
  0.480
ENSCHAP00000007027
annotation not available
    
  0.478
ENSCHAP00000048484
HAUS augmin-like complex, subunit 3.
    
 0.458
ENSCHAP00000060831
annotation not available
    
 0.458
ENSCHAP00000046846
annotation not available
    
 0.445
ENSCHAP00000040369
Sterile alpha motif domain containing 7.
  
  
  0.438
ENSCHAP00000037565
annotation not available
    
  0.433
gnas
GNAS complex locus.
    
  0.433
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.