STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sparcSecreted protein acidic and cysteine rich. (324 aa)    
Predicted Functional Partners:
lum
Lumican.
   
  
 0.952
dcn
Decorin.
   
  
 0.898
ENSCHAP00000046579
Stabilin 1.
     
 0.723
ENSCHAP00000057922
Stabilin 2.
     
 0.723
ENSCHAP00000049773
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.702
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.672
ENSCHAP00000032703
annotation not available
   
 
  0.653
ENSCHAP00000049395
annotation not available
   
 
  0.653
ENSCHAP00000049489
annotation not available
   
 
  0.653
LOC105909579
Apolipoprotein B-100-like.
   
 
  0.653
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.