STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000045529Selenocysteine lyase. (443 aa)    
Predicted Functional Partners:
iscu
Iron-sulfur cluster assembly enzyme.
 
 0.999
fxn
Frataxin.
   
 0.995
ENSCHAP00000007570
annotation not available
   
 0.976
ENSCHAP00000059218
LYR motif containing 4.
   
 0.976
LOC105909981
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like.
  
 0.958
ENSCHAP00000062817
NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae).
  
 0.958
MOCOS
Molybdenum cofactor sulfurase.
    
 0.937
LOC105908670
Cystathionine beta-synthase-like.
  
 
 0.936
sephs1
Selenophosphate synthetase 1.
    
 0.932
ENSCHAP00000003746
Iron-sulfur cluster assembly 2.
  
 
 0.928
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.