STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf12Transcription factor 12. (718 aa)    
Predicted Functional Partners:
ENSCHAP00000018295
annotation not available
    
 0.935
ENSCHAP00000025324
annotation not available
    
 0.893
CTNNB1
Catenin beta 1.
    
 0.893
lmo2
LIM domain only 2.
    
 0.854
ENSCHAP00000010671
Junction plakoglobin a.
    
 0.842
ENSCHAP00000030901
Junction plakoglobin b.
    
 0.842
myog
Myogenin.
   
 0.839
ID1
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.838
myf6
Myogenic factor 6.
    
 0.829
MYOD1
Myoblast determination protein 1 homolog 1-like.
    
 0.819
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.