STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000045707RAB41, member RAS oncogene family. (228 aa)    
Predicted Functional Partners:
ENSCHAP00000014626
annotation not available
    
 0.960
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.939
ENSCHAP00000036865
VPS39 subunit of HOPS complex.
    
 
 0.902
ENSCHAP00000023906
GDP dissociation inhibitor 1.
   
 0.901
gdi1
GDP dissociation inhibitor 1.
   
 0.901
gdi2
GDP dissociation inhibitor 2.
   
 0.901
ENSCHAP00000047010
Zgc:112334.
   
 0.901
ENSCHAP00000019684
VPS52 subunit of GARP complex.
    
 0.900
vps53
VPS53 subunit of GARP complex.
    
 0.887
ENSCHAP00000024855
annotation not available
   
 0.883
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.