STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000045772annotation not available (392 aa)    
Predicted Functional Partners:
ENSCHAP00000031540
Microtubule-associated protein 1 light chain 3 alpha.
    
   0.673
map1lc3b
Microtubule associated protein 1 light chain 3 beta.
    
   0.673
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
 0.655
ube2n
Ubiquitin conjugating enzyme E2 N.
    
 0.655
ENSCHAP00000030291
Ubiquitin B.
    
  0.574
rps27a
Ribosomal protein S27a.
    
  0.559
sumo1
Small ubiquitin like modifier 1.
    
 0.530
rpsa
Ribosomal protein SA.
   
 
 0.492
LOC105910950
Growth arrest-specific protein 7-like.
    
  0.459
ENSCHAP00000050573
annotation not available
    
  0.459
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.