STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105902015Voltage-dependent calcium channel gamma-7 subunit-like. (343 aa)    
Predicted Functional Partners:
ENSCHAP00000028374
annotation not available
   
 0.927
LOC105902522
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit.
   
 0.926
LOC105897688
Serine/threonine-protein phosphatase alpha-2 isoform-like.
   
 0.905
ENSCHAP00000011184
Protein phosphatase 1, catalytic subunit, alpha isozyme b.
   
 0.905
ppp2ca
Protein phosphatase 2 catalytic subunit alpha.
   
 0.889
ENSCHAP00000029157
Protein phosphatase 2, regulatory subunit B, delta.
    
  0.879
LOC105903502
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform-like.
    
  0.879
LOC105902388
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform.
    
 0.874
ppp2cb
Protein phosphatase 2 catalytic subunit beta.
   
 0.871
camk2a
Calcium/calmodulin dependent protein kinase II alpha.
    
  0.866
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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