STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046100BTB (POZ) domain containing 2a. (605 aa)    
Predicted Functional Partners:
ENSCHAP00000027667
Cullin 3a.
   
 0.867
cops3
COP9 signalosome subunit 3.
    
 0.827
cops2
COP9 signalosome subunit 2.
   
  0.817
cops5
COP9 signalosome subunit 5.
    
  0.811
cops8
COP9 signalosome subunit 8.
    
  0.775
rbx1
Ring-box 1.
   
 0.749
COPS6
COP9 signalosome subunit 6.
    
  0.746
ube2m
Ubiquitin conjugating enzyme E2 M.
    
  0.731
ube2f
Ubiquitin conjugating enzyme E2 F (putative).
    
  0.731
ENSCHAP00000039121
Protein phosphatase 1, regulatory subunit 42.
    
  0.730
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.