STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MPDZMultiple PDZ domain crumbs cell polarity complex component. (1756 aa)    
Predicted Functional Partners:
ENSCHAP00000008881
Angiomotin.
    
 0.884
LOC105909465
MAGUK p55 subfamily member 5-A-like.
    
 0.865
ENSCHAP00000024343
Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5).
    
 0.865
amotl2
Angiomotin like 2.
   
 0.831
ENSCHAP00000041859
annotation not available
    
0.801
ENSCHAP00000024297
Tight junction protein 3.
    
0.800
PLCB4
Phospholipase C beta 4.
   
  0.790
PLCB4-2
Phospholipase C beta 4.
   
  0.790
ENSCHAP00000011993
Membrane protein, palmitoylated 7a (MAGUK p55 subfamily member 7).
    
 0.757
ENSCHAP00000028538
Membrane protein, palmitoylated 3a (MAGUK p55 subfamily member 3).
    
 0.757
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.