STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105891558Motor neuron and pancreas homeobox protein 1-like. (330 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
 
 0.566
LOC105891883
pre-B-cell leukemia transcription factor 2-like.
   
 0.557
ENSCHAP00000004371
annotation not available
    
 0.539
ENSCHAP00000012415
annotation not available
   
 0.539
ENSCHAP00000048618
annotation not available
   
 0.539
ENSCHAP00000048785
pre-B-cell leukemia homeobox 1b.
   
 0.539
pbx4
PBX homeobox 4.
   
 0.539
ENSCHAP00000033762
Regulatory factor X, 6.
      
 0.532
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.476
ENSCHAP00000013725
Regulatory factor X, 4.
      
 0.445
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.