STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046173TBC1 domain family, member 23. (694 aa)    
Predicted Functional Partners:
ENSCHAP00000045209
WASH complex subunit 4.
   
 
 0.938
ENSCHAP00000045435
annotation not available
     
 0.934
washc5
WASH complex subunit 5.
     
 0.933
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
     
 0.930
ENSCHAP00000027356
WASH complex subunit 3.
     
 0.929
ENSCHAP00000041905
WAS protein family homolog 1.
     
 0.928
ENSCHAP00000030749
Sorting nexin 27a.
     
 0.857
ENSCHAP00000040336
annotation not available
     
 0.857
snx17
Sorting nexin 17.
     
 0.807
ENSCHAP00000034481
Duboraya.
     
 0.799
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.