STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
armc7Armadillo repeat containing 7. (190 aa)    
Predicted Functional Partners:
ENSCHAP00000033639
RNA binding motif protein 48.
  
 
 
 0.975
scnm1
Sodium channel modifier 1.
    
 
 0.938
ENSCHAP00000041714
G patch domain and KOW motifs.
   
   0.938
ENSCHAP00000058178
Peptidylprolyl isomerase (cyclophilin)-like 2.
    
 
 0.935
snrpe
Small nuclear ribonucleoprotein polypeptide E.
    
   0.934
sf3b6
Splicing factor 3b subunit 6.
    
   0.934
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
   0.934
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
   0.934
cwc22
CWC22 spliceosome associated protein homolog.
    
   0.934
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
   0.934
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.