STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105892788Nuclear distribution protein nudE-like 1-A. (344 aa)    
Predicted Functional Partners:
pafah1b1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
    
 0.955
ENSCHAP00000038251
Platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b.
    
 0.864
ENSCHAP00000007400
nudC nuclear distribution protein.
     
 0.781
KIF18A
Kinesin family member 18A.
   
 
 0.761
kif3a
Kinesin family member 3A.
     
 0.755
ENSCHAP00000004775
Kinesin family member 14.
     
 0.754
ENSCHAP00000041549
Kinesin family member 21B.
     
 0.736
ENSCHAP00000039106
DISC1 scaffold protein.
    
 0.733
kif7
Kinesin family member 7.
     
 0.729
nudcd3
NudC domain containing 3.
     
 0.728
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.