STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046645TNF superfamily member 13b. (259 aa)    
Predicted Functional Partners:
ENSCHAP00000012293
annotation not available
    
 0.996
ENSCHAP00000006055
annotation not available
    
 0.980
tnfsf12
TNF superfamily member 12.
   
 0.863
ENSCHAP00000029236
CD40 ligand.
   
 
 0.838
ENSCHAP00000000392
annotation not available
     
 0.814
traf3
TNF receptor associated factor 3.
   
 0.774
LOC105907631
TNF receptor-associated factor 5-like.
   
 0.773
ENSCHAP00000021396
TNF superfamily member 11.
   
 0.764
ENSCHAP00000046708
annotation not available
   
 0.764
ENSCHAP00000051364
annotation not available
   
 0.764
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.